I just talked to the staffs of Biotec in Bangkok. They are interested in exploiting GPGPU in their application. They would like to apply some algorithms (now they are using EM) to infer haploid genotype. Anyhow this genetic area is new to me. I will study about it during summer. Hopefully I will be able to gain something to write about before fall.
Note:
http://en.wikipedia.org/wiki/Haplotype
http://en.wikipedia.org/wiki/EM_algorithm
keywords: monte carlo, EM algo (Expectation-maximization algo), expectation maximization haplotyping
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